YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|252972512, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGENTLITE NTSLYMNISA GLNASSSVSL SVSEYSDAEV VLISILIGIL VLVIVFGNAL  60
   61 VISAIVRFQR LQTVTNYFIS SLACADLVMG LMVVPFGACY ILLNTWHFGN FFCEFWTATD 120
  121 VLCVTASIET LCVIALDRYI AIMWPLRYQS MLTKRKACGM VIGVWAVAAL ISFLPIHMEW 180
  181 WVSDEPEALS CLEEPTCCDF NTNAAYAVTS SIISFYIPLV IMAFVYSRVF QEARRQLQKI 240
  241 DRIEGRIRTQ SLSTQEGNEI KNRRTKFCIK DHKALKTLGI IMGTFTLCWL PFFVLNVVAA 300
  301 IWKMDNIMLP FRILNWIGYA NSAFNPLIYC RSPEFRCAFQ EILCWRPSHL RSTRSKKGYL 360
  361 YSGHSWKVHT KTTRPREPSP ACETEIGAEC LTAGTKNKNG NYNKTVTSI

Type	Start	End	Confidence
Cytoplasmic	1	12	0.56
Transmembrane Helix	13	32	0.56
Non-Cytoplasmic	33	40	0.84
Transmembrane Helix	41	66	0.87
Cytoplasmic	67	76	0.88
Transmembrane Helix	77	102	0.83
Non-Cytoplasmic	103	115	0.84
Transmembrane Helix	116	136	0.91
Cytoplasmic	137	156	0.84
Transmembrane Helix	157	177	0.93
Non-Cytoplasmic	178	207	0.92
Transmembrane Helix	208	230	0.86
Cytoplasmic	231	277	0.96
Transmembrane Helix	278	302	0.84
Non-Cytoplasmic	303	311	0.79
Transmembrane Helix	312	330	0.63
Cytoplasmic	331	409	0.69