YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	twk-23
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTMCLRSTR NIFYPYFSPI VANKQKLKCN SKCAWMKFRN VLRIALGHLA LYCFVVCYVF  60
   61 AGAWVFHQLE GENETELHDK QREYAMNLKK DVIAKLATTE NVAEINEHLR MFLRNISNLH 120
  121 ISLDNYLIFN EPTQIVPKRW TFPSSVLFSF TILTTIGYGN VTPHTQQCKV FLMIYGAFGI 180
  181 PLFLITIADL GRFSKTAIMA LVQKVSKREL KKQSDEHLLR EIAEVSPYLD VLLVAGLFVV 240
  241 FIAIGSAVIP LWENQLTYFD SVYFSYMSLT TIGLGDIVPR RMDFLLPTLI YITIGLWLTT 300
  301 ALVEQLADVF RLVHYAGRQV TNVKGITVWL GGRRLSMGGL ISTVCRRVGM SDNLINQINW 360
  361 DRTVIDALDG KMPPTLPIFP WHFTDFLEHD PPLIDLSIDL DQMDGSFYCS KPLSAKKQRR 420
  421 ASQMSAPAIS WMRPQEEARI LDADGTFPNI DA

Type	Start	End	Confidence
Cytoplasmic	1	43	0.79
Transmembrane Helix	44	66	0.88
Non-Cytoplasmic	67	169	0.61
Transmembrane Helix	170	191	0.90
Cytoplasmic	192	227	0.58
Transmembrane Helix	228	251	0.88
Non-Cytoplasmic	252	258	0.48
Transmembrane Helix	259	278	0.70
Cytoplasmic	279	283	0.54
Transmembrane Helix	284	303	0.82
Non-Cytoplasmic	304	452	0.49