YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE19788
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLTTLPPSQ LRPELEWLFP KEVTTSSSAI LKNKSAAEIP LNFLAEHSLA LIAALFLVVL  60
   61 TVALLAVLVQ YHCQKGTNSG GLGAGAISPK SFSTSPSQWT TCSTVSSTYS TQSLLQLIGS 120
  121 DLRQSLQGLL LPSEAVVLET IVGKGYFGNV YRGRMRDPAG RLIPVAVKTL KGERARDIAH 180
  181 IEKFLREGVV MKHLDHPHVL SLLGISISPA GNPWVVLPYM EGGDLKTYIA DPNRALCVLE 240
  241 LLDFAHQVAQ GMSYLAAQHF VHRDLAARNC MISADRIVKV ADFGLAVDLL DKESYIDESE 300
  301 TGPARLPLKW LAPESLRDRR VFSSATDVWS FGVLMWELLT RAASPYGEVS NTKVRHYLET 360
  361 GMRLPQPTHC PDIIYDLMQC CWRSTPEDRP DFVFLSHRLR ALLQENTPDP FTRRVRPGAE 420
  421 QFLLPVLPGR LFTNYFAAQM HS

Type	Start	End	Confidence
Cytoplasmic	1	48	0.78
Transmembrane Helix	49	69	0.92
Non-Cytoplasmic	70	442	0.84