YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	nkb-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGSNSSRDD SQQRKSFLDK QNSSKTAKSR VGSSEKSKSS KTEKSTQQSE KKTERSTANT  60
   61 TIKSEAPSKK LITQQSTASI QSVGRRGPKM SDGTEFDAGP YGYIFSFIFL FVLWGLATML 120
  121 AIALVWFNFS RLDRQYPIYF GDGSFLGGAP KVSFDPNPRQ FLEDGTKNAM SWNIYEFSTY 180
  181 VNYLIRYKQV LKKYSGGIGK QKVKKEEMCK NQTMTRENAC KFDRLTDFGE CTLSLDNLER 240
  241 GFGYSKGQPC IMLKLNKIVG WVPNLSPSKN KTKCPSGDLC CGQGIKFKCT SNADVKFEYF 300
  301 PKTGIPTCYF PYANQGGYEQ PYQMVKLTNI TVNRETTIEC APEDSSLNTL ASGKTNEARF 360
  361 HILMTKNRPV ETVG

Type	Start	End	Confidence
Cytoplasmic	1	102	0.82
Transmembrane Helix	103	127	0.89
Non-Cytoplasmic	128	374	0.83