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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: syg-2
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.93
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSQAILLWL FGSIHISSQF FLESPSNLST IAGESITFRC SAEKSPEPIV YSQWKSNTGS  60
   61 LLGYHQEGIL PGHQGRFSYI KQNAEELHLK ITHVNLDDDG EYECQMLHPE EGPIRAKSFL 120
  121 NIIVPPQLVY FSNYQPNSII AVKENTPLNI TCVVPNVKPE PEVLWYMDGK VMSRDVKQAS 180
  181 TPHLNKTFTV YTSLVVQSDR NDHGKVITCE AFQKETDIRI TTNTTLDVLF PPSDPTVEIL 240
  241 RNPSALRSGD NVTIACSVTG GNPPPDVFWY HENKRLQSHS TLDTRSKEIK NIYSFIASQN 300
  301 DNMAEYECRA NNSRTGNPKR KAMKLEVNYP PASVELFGES NIRYGSSANI QCKSLPSNPA 360
  361 SQITWIINGR SVPTPTQREF VVENGIVSSS NVSVHSNELS VEAHQINVEC MATNPEGSSA 420
  421 KQHVIKIIAP PKAPIITGLE DRKFFEGDIV NVTCEAQGGN PLAELSWYRG SEKHLVKGRK 480
  481 KMKWSQVKKK LVMSLLCLCE VVIMNFFRFS KNVFYFFRFT LFIECGVNGA HNEVAGFSSY 540
  541 STLALRVDRT MNTQRLKCEA TNAALDEPLI ESQYLSVYYP PRRVLIRPAD SGDQRLLVGK 600
  601 SARLVCGTLS SNPAAHISWQ FSRATDDNKV HLGDVSLNET TRDNGFNVEN VLSFTPTEEY 660
  661 DGTVVHCIAN HPEWKHSVNT SFPLNVMYPP KMLVNDPVTV VMSEGDSFKE NLTVRGNPAI 720
  721 SLWQWRKNGV PFDHTIGRVF ARGAVLSGKQ LLSTDAGVYT LTATNSVGST NITIKLAVEY 780
  781 SARITSISTP VIAATGDTVL LECEADGEPS KANMIHWYKN GEILAAQHRG HKKAILRLNA 840
  841 TEQQSGEYTC KADNGIGVPA EGQTFLLVNS APRVLPVARY AKTAGILGGV AKARCKVYAV 900
  901 PTVEFVWEKD EQLIKKNSSK YSIVNTQIDY STYESTLWIK NIVPDDYTKK VKCIARNSFG 960
  961 TDHLSIPIIP PTHPDEPFNL TMTNSTLNTI SVAWEPRFDG GSDQIFEVKY RRQNDDLIHL1020
 1021 VNTTHTNLRL SGLATANTYF FQIRSINARG FASSWTSPVI FATLNEDGVN VAMIRNEKLK1080
 1081 LTTWIPYILI FIVLFMLLNV VICCFVCNRT KKRKLREKTE MARTAINGGD VRQVQMYGTM1140
 1141 MGNDGMSRRD IDDRPEMSED EHSVRTMIEV SPNGYMQPIE PMLYESTGLL EYDYQTRSYM1200
 1201 GSSQGTRSMT YANVPYPEPP QPSYHSNWNS LQRQSNNNTS PQHHLSTFIN PNMGVRAGPI1260
 1261 NYAQLDGDLV 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle