YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srab-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNETDCQVM AEVATSSFLR TSLGMTTLLC ILCVPCTIYS FLAIQKATKL HFNSKCIFHT  60
   61 LTIFAFIHMI VRIILHGKDL LNYVGPWMSG CEIFPSRSRC ELRKLYKISA FVVEVTPFVL 120
  121 TAERFVATFR ARHYENRYKW CGVLLNIFHI SLALFLFTIQ SSEKVGGDII YYCWMSSTGN 180
  181 RYMLNLPIFV IVFSQLITIP ALLYLLRKNE KFREASLQKR STLSQRYQLS QNLQTLTKFR 240
  241 IVSTVTWIYV TYNAAATFGV HFFLKSMSSA GQFAIIEIVH CLPLYYLILI FLMVKEDKKP 300
  301 HRQFSIKVDH YEPQYFNDLQ KFFDQSFDKV KKTKSVTFVV S

Type	Start	End	Confidence
Cytoplasmic	1	20	0.55
Transmembrane Helix	21	44	0.87
Non-Cytoplasmic	45	55	0.46
Transmembrane Helix	56	76	0.88
Cytoplasmic	77	139	0.69
Transmembrane Helix	140	159	0.95
Non-Cytoplasmic	160	183	0.92
Transmembrane Helix	184	206	0.93
Cytoplasmic	207	244	0.93
Transmembrane Helix	245	264	0.90
Non-Cytoplasmic	265	272	0.82
Transmembrane Helix	273	294	0.93
Cytoplasmic	295	341	0.99