YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ooc-3
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIIWVTLLL LVPQLFATQD IDEEFTHENV WKDPNDPTSG ESPPASKRLL SVRNQVQKFQ  60
   61 PDQSLRLILR QLLHETKIDY HLEGSIKKDV QIKISRHSMS VLSKYLKNDE ADLAEEREAV 120
  121 RSALSNIFSV KPPAPDRTWQ DTFVTLQPFI FTLNIFILPA AAFVVLRSIV RPRNFWILVL 180
  181 STALLVSMYS GYSKKYQEAE SRRFAQFQEH AHDSCATEGL LSRMVEILAS PFQYRQKSKC 240
  241 LKYIESQTIS IFHEISIIEV FSETISGGFF AFFSGSAKHF NLFFRNLYDG APLIAQIVMT 300
  301 IFLVLMLGAI RTPFFSYEPI WLNFCSSSIG KIAGWLDGEP PQQPAPQLLI TAKEMKRLEQ 360
  361 ARNKKPEMIS YPTSEREDVV SGSENGNEKK SDNEREESMK MEEDSAPVES SLEDDLSLLG 420
  421 ESSEDEDEEK VNESPAKIDS TTLSESSF

Type	Start	End	Confidence
Signal Peptide	1	17	0.98
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	147	0.97
Transmembrane Helix	148	166	0.88
Cytoplasmic	167	254	0.50
Transmembrane Helix	255	277	0.68
Non-Cytoplasmic	278	289	0.52
Transmembrane Helix	290	314	0.81
Cytoplasmic	315	448	0.49