YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE19269
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCSYSLAPAI FCLFFIPMVS ATGHLRLELT ASSHFSLHLS TNSSLQIVEL AMGSTRTLSF  60
   61 HPKDHQETLE IVFSKEFNFP LKYAYKMETD DSSYQTFAFT DIVLLVKSTF KCDAGFNGKS 120
  121 CQEKTTSTTT TTSTKTEIQT TTTTVLISEV PSTTPIINAA AFQQFDNSNT IMCSVLIIVT 180
  181 ATLLVLVLIA FFLLKFQKKN VYIRPGTPNL EKCPMKLEDS GFSSPTSPRY TAEPHSLF

Type	Start	End	Confidence
Signal Peptide	1	21	0.98
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	170	0.99
Transmembrane Helix	171	194	0.93
Cytoplasmic	195	238	0.98