YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE19232
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLELLKWIM LGVMALMTII FGLLPIKVIS YLNTTKSAIH QHSSLILSLF SCFAGGVFLS  60
   61 VCFLDMLPDC LEAWESVQTD TNYTSDYPFV QLIALLGFFF VYLTEELSSV ICNVGHGHSH 120
  121 SNDPIMESNV TFPRARLATV GSIFNVEGNL VEPCKRSLEN YDDDGEGPVR QSIIFTSAFI 180
  181 LHVFFECFAF GIQEDAVSVT SIFLGIAMHK AIVMFSLGMK LTRTHPRRSW IVVILILVLA 240
  241 LFNVIGGTAG ILISSSNMNQ TPKDITTAVL MSFSLGTFLY ISFFEILAPE RANNHSNILQ 300
  301 WIASFGGFAL LAVNMIWAT

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.62
Transmembrane Helix	8	29	0.92
Cytoplasmic	30	44	0.58
Transmembrane Helix	45	67	0.89
Non-Cytoplasmic	68	86	0.64
Transmembrane Helix	87	104	0.65
Cytoplasmic	105	172	0.90
Transmembrane Helix	173	192	0.88
Non-Cytoplasmic	193	198	0.76
Transmembrane Helix	199	219	0.89
Cytoplasmic	220	229	0.86
Transmembrane Helix	230	253	0.93
Non-Cytoplasmic	254	264	0.91
Transmembrane Helix	265	287	0.89
Cytoplasmic	288	297	0.87
Transmembrane Helix	298	318	0.95
Non-Cytoplasmic	319	319	0.99