YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE19216
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.98
Transmembrane Helix	32	56	0.89
Non-Cytoplasmic	57	103	0.96
Transmembrane Helix	104	124	0.91
Cytoplasmic	125	131	0.86
Transmembrane Helix	132	153	0.90
Non-Cytoplasmic	154	162	0.62
Transmembrane Helix	163	181	0.91
Cytoplasmic	182	190	0.73
Transmembrane Helix	191	215	0.84
Non-Cytoplasmic	216	222	0.78
Transmembrane Helix	223	242	0.95
Cytoplasmic	243	284	0.95
Transmembrane Helix	285	305	0.90
Non-Cytoplasmic	306	322	0.75
Transmembrane Helix	323	342	0.90
Cytoplasmic	343	358	0.88
Transmembrane Helix	359	379	0.90
Non-Cytoplasmic	380	387	0.71
Transmembrane Helix	388	409	0.88
Cytoplasmic	410	418	0.82
Transmembrane Helix	419	442	0.87
Non-Cytoplasmic	443	453	0.89
Transmembrane Helix	454	473	0.95
Cytoplasmic	474	516	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASSETTSS GTICDQVDKE EGRYGCRGAN RYIILVIGLF FLSFLLSSII CYNACYVSMV  60
   61 NPQSSPYWED FVNSNKSLDE INWNDPDLPL SQRRFAFDTT QKSLGFAAGF LGAIAAVVPM 120
  121 SRLTARFGVH KVMTLSGILG TFLVVITPIV ITWSFPVFVI LRVLQGITLA NLFTTAGVVV 180
  181 NEWAAVNEKG LFISVLSAHV EMGAVFTMPV SGALATSAGW PWVFYLHGAI LGALTILWAV 240
  241 YYRDRAVKHP FVQRKEWRKI SFGKKLDQTG KGSNETPIRK IVSSIVIWGV WIAVIGNFLV 300
  301 SQFSISYAPI YLRGVIGCTP TEAGLLTLIP MACLLVIKFS TGFFSDRIKS ISDLTKMKMF 360
  361 NSCALLGSSI FFIILSCSSP GGSKVLDVIL LSIPMALLGF SSGGYSKCAV MVSGQYSPFV 420
  421 MSIVQIIACS SLMAGSFLVP ALTPSDSFSE WQRVFMIYGA VLAITNTIFI VFARAEPAKW 480
  481 AQQKGDLTLA EAVMGSEPKN TEVMPVDSEV GASPRI