YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	hmit-1.1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	41	0.95
Non-Cytoplasmic	42	64	0.88
Transmembrane Helix	65	87	0.87
Cytoplasmic	88	96	0.84
Transmembrane Helix	97	116	0.95
Non-Cytoplasmic	117	121	0.72
Transmembrane Helix	122	144	0.89
Cytoplasmic	145	153	0.83
Transmembrane Helix	154	177	0.86
Non-Cytoplasmic	178	186	0.84
Transmembrane Helix	187	208	0.91
Cytoplasmic	209	275	0.98
Transmembrane Helix	276	299	0.76
Non-Cytoplasmic	300	315	0.84
Transmembrane Helix	316	338	0.90
Cytoplasmic	339	345	0.87
Transmembrane Helix	346	369	0.93
Non-Cytoplasmic	370	463	0.93
Transmembrane Helix	464	489	0.84
Cytoplasmic	490	500	0.78
Transmembrane Helix	501	524	0.83
Non-Cytoplasmic	525	532	0.73
Transmembrane Helix	533	552	0.95
Cytoplasmic	553	606	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAVAAFSSS GQDKPAHTPK LGLFVYILAA ASVIGGFLFG YDTSVVSAAM LYMPDAPGLK  60
   61 PMDTVWQEVL VSISPGMAAV GSLMSGTSSD YIGRRKVILG ASAIFTIGAL VCAASVNKIM 120
  121 LLVGRVLLGI AIGFASMIVP VYLGETAPTH VRGMLVAAFA LMISFGQVVA NITGGAFSYI 180
  181 DPYNVGWRLM FAFAAVPSII QFVCFMFLPE TPRWLYENGF ETETREVLEK VYNGDKEWVE 240
  241 YEMAEIIAFN EDQAKENEKA HASGPVIWRI LKTPHVLKAC FIGSMLQAFQ QLAGINTILY 300
  301 YTADIIRSSG ISNNHTTIWI SVLLSLCNFI GPFVPMSLIE KVGRRIIFLF SCGLVVLSLV 360
  361 FIGVAFLLVN HDSAATLPAN QYGSNFNSSY PDAKGCMAYS NCDYCVTTDA CGFCHDANTK 420
  421 QGYCLPAGFD NPEVYSSTGS CTNSNGSIAN NFKWEKYYCD TKYTLLPIIA CGVYLLTFSS 480
  481 GFTSLPWVLN SEFYPMWARS TCVAISTTSN WVFNLIIALT YLSLTQVIGK YGAFWLYAGL 540
  541 TVIAFIFILF LVPETKGYSI EEVEMLFMNK KQRREAESRR RETVTEVRSR MNSTVSFGQH 600
  601 NEVHKY