YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srbc-65
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLIKTLIFI ISGILCQTAS YLNLSILIAI FYTKKVPAKP DLVLFYSRLI IDTAYPFCAS  60
   61 FNKFYYFLHL FTEKLVIRNA TFFMLWPIIP LGIVRSILML SINIDRLGAL YFPIFYFKYH 120
  121 RKFPISIIVI LTLTYILVDQ YVTFEYCNYI ISVPLDCFDF QCAVNQCVFE HWFYRDQVMY 180
  181 FSNGFLSILL CFRLYIWNTF KKAASSHALS RATRIAVLDS IVILCFHIIP LLVFRYFPTV 240
  241 NYYNFGPWTA VFKHSGFTVE AIILRKLLFR EKKVICIRIA PHF

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.58
Transmembrane Helix	7	32	0.87
Cytoplasmic	33	43	0.55
Transmembrane Helix	44	65	0.56
Non-Cytoplasmic	66	81	0.76
Transmembrane Helix	82	102	0.86
Cytoplasmic	103	122	0.76
Transmembrane Helix	123	142	0.84
Non-Cytoplasmic	143	177	0.97
Transmembrane Helix	178	197	0.95
Cytoplasmic	198	214	0.92
Transmembrane Helix	215	237	0.88
Non-Cytoplasmic	238	249	0.84
Transmembrane Helix	250	269	0.85
Cytoplasmic	270	283	0.91