YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	nhr-3
Protein type:	Globular with Signal Peptide
Type Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDTQSPFSF AAALLQCGSP GQTFSMESLL KPELGEYSPS GENGIDGEES TICSVCCDEA  60
   61 SGRHYGVVAC FGCKGFFRRT VRAGKNYVCR YSKKCRIDKA GRNVCRSCRF QKCLEVGMEP 120
  121 DAIRPDRDKT GRQKNPRRNT EGSIKKVSVG SILGDLPCLN KFKDDSDDAA TSPSSRADSA 180
  181 PMDLRPSFID ESVLTTLTEI ENIVIQLQDN FETNQQSLPP MGEAITKPSL IAARTLLNFN 240
  241 GAKGVADANC VSSNLRRMIV FTFDYINTLR PIADLHPSEK LVIARSIISP FCILFCGYQS 300
  301 VAIEAPEHDS IYLPSGHKLP ASQLLFTKDS DQKKYILLEN KADNVRRNMT EMIIQQLRRL 360
  361 NVTKTEMVAL KAIMALDHNV KGLSAESCEL LVVARESVQN ALFSHLIATF GTAEATSRFA 420
  421 HLLLLIASAT RVAYSLSSFF QLSRDVNYEI DYVLEELLFL DRI

Type	Start	End	Confidence
Signal Peptide	1	25	0.85
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	463	0.98