YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE18777
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.76
Transmembrane Helix	15	36	0.91
Non-Cytoplasmic	37	54	0.76
Transmembrane Helix	55	73	0.91
Cytoplasmic	74	80	0.61
Transmembrane Helix	81	99	0.60
Non-Cytoplasmic	100	111	0.56
Transmembrane Helix	112	129	0.67
Cytoplasmic	130	139	0.79
Transmembrane Helix	140	163	0.86
Non-Cytoplasmic	164	169	0.69
Transmembrane Helix	170	192	0.91
Cytoplasmic	193	208	0.93
Transmembrane Helix	209	232	0.91
Non-Cytoplasmic	233	240	0.80
Transmembrane Helix	241	263	0.93
Cytoplasmic	264	274	0.85
Transmembrane Helix	275	295	0.88
Non-Cytoplasmic	296	299	0.62
Transmembrane Helix	300	318	0.54
Cytoplasmic	319	332	0.48
Transmembrane Helix	333	351	0.79
Non-Cytoplasmic	352	357	0.47
Transmembrane Helix	358	379	0.91
Cytoplasmic	380	399	0.51
Transmembrane Helix	400	416	0.36
Non-Cytoplasmic	417	429	0.57
Transmembrane Helix	430	453	0.72
Cytoplasmic	454	498	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYVARFFNH PEINLITTTV LIFASLYIAI ISLLGHDFLT PLHAIPPGAP SENKTVKSTF  60
   61 IIFLLLFGGL FAAKSSNALR LPPLFGCLAL GIVIRNVDVL KDFFIIPPFT ETMIRKVALA 120
  121 MIVIRWGLAT DVKFLYENAV TPVTIGLVTA IGEIIAITIA SFLILDISFV MAVFCALILV 180
  181 IVSPAVTVPA MISFKERGLG SSKRIPENVL AVCCVDNLFC VIVFMVLSSI IFTDAPIATT 240
  241 ILMNAGSILL GCIGGIIIGL LLWRFPRPDT THTQFARITL LGTSCIGLMI GTYLVKYSCA 300
  301 GFLAALITSS MCAMKWKTDN KDKLDCVVST YKYVWDSFAL PLLFICLGLK FDFSTLSWKI 360
  361 VLLCISVICI GLIVRALLVM LTTHFSHFNV KEKAVIALSL LPRATFQADL APTLVVMATP 420
  421 FPDKLPDAEL VMKAAILSVL ITAPIFDILL NLIGSKFLYH VLPQEDVALE NNEVPTENGS 480
  481 KLFAADNLFS DDTKIASL