YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	nkb-3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNGGRNGEE NKNLMNGEAK AEPETFAQFL YNKDKGTVLG RTGTSWCQIT VFYIIFYIFL  60
   61 SAFFIGCLSI FLRTLDPKVP RFYGKGTIIG VNPGVGYQPW LKENPDSTLI KFNLQDSKSW 120
  121 EPYVKQLDNY LSKYKNTNET RDCGASDNND ALETDTDTFP CRFDLGLFEK ANCGAKDQYG 180
  181 YKSGKPCVAV SLNRLIGWRP VNYDDGSVPE EIKGRYKPGS ITINCEGATS FDKEHLGKVK 240
  241 YIPETGIDGR YYPYVFVPSY QQPIAMVKFD TIPRNKLVIV ECRAYASNIE HDISTRLGMV 300
  301 YFELFVEDKK PVAAPAA

Type	Start	End	Confidence
Cytoplasmic	1	48	0.66
Transmembrane Helix	49	72	0.90
Non-Cytoplasmic	73	317	0.72