YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-133
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEKQRLQAY RFVAYSAVTF SVVAVFSLCI TLPLVYNYVD GIKTQINHEI KFCKHSARDI  60
   61 FAEVNHIRSS PKNASRFARQ AGYGGDEGVD QGSEGAQGGS CSGCCLPGAA GPAGTPGKPG 120
  121 RPGRPGAAGL PGNPGRPPAQ PCEPITPPPC KPCPQGPAGA PGAPGPQGDA GAPGAPGQGS 180
  181 GAGAPGPAGP KGASGAPGNP GQAGAPGQPG ADAQSESIPG APGQAGPQGP PGPAGSPGAP 240
  241 GGPGQPGAPG QKGPSGAPGQ PGADGNPGAP GQPGQAGGAG EKGICPKYCA IDGGVFFEDG 300
  301 TRRK

Type	Start	End	Confidence
Cytoplasmic	1	11	0.87
Transmembrane Helix	12	36	0.84
Non-Cytoplasmic	37	304	0.94