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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: him-4
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRSPSWLYG VLGLLLLATT CSSVNDDKND PTGKSSLAFV FDITGSMFDD LVQVREGAAK  60
   61 IFKTVMAQRE KLIYNYIMVP FHDPYLGEII NTTDSTYFMR QLSKVYVHGG GDCPEKTLTG 120
  121 ILKALQISLP SSFIYVFTDA RSKDYHLEDE VLNTIQEKQS SVVFVMTGDC GNRTHPGFRT 180
  181 YEKIAAASFG QVFHLEKSDV STVLEYVRHA VKQKKVHLMY EARERGGTVS RNIPVDKHLS 240
  241 ELTISLSGDK DDSDNLDIVL RDPEGRTVDK RLYSKEGGTI DLKNVKLIRL KDPSPGVWTV 300
  301 NTNSRLKHTI RVFGHGAVDF KYGFASRPLD RIELARPRPV LNQDTYLLIN MTGLIPPGTV 360
  361 GEIDLVDYHG HSLYKAVASP HRTNPNMYFA GPFVPPKGLF FVRVQGYDED NYEFMRIAPT 420
  421 AIGSVIVGGP RAFMSPIHQE FVGRDLNLSC TVESASAYTI YWVKTGEDII GGPLFYHNTD 480
  481 TSVWTIPELS LKDAGEYECR VISNNGNYSV KTRVETRESP PEIFGVRNVS VPLGEAAFLH 540
  541 CSTRSAGEVE IRWTRYGATV FNGPNTERNP TNGTLKIHHV TRADAGVYEC MARNAGGMST 600
  601 RKMRLDIMEP PSVKVTPQDV YFNMREGVNL SCEAMGDPKP EVHWYFKGRH LLNDYKYQVG 660
  661 QDSKFLYIRD ATHHDEGTYE CRAMSQAGQA RDTTDLMLAT PPKVEIIQNK MMVGRGDRVS 720
  721 FECKTIRGKP HPKIRWFKNG KDLIKPDDYI KINEGQLHIM GAKDEDAGAY SCVGENMAGK 780
  781 DVQVANLSVG RVPTIIESPH TVRVNIERQV TLQCLAVGIP PPEIEWQKGN VLLATLNNPR 840
  841 YTQLADGNLL ITDAQIEDQG QFTCIARNTY GQQSQSTTLM VTGLVSPVLG HVPPEEQLIE 900
  901 GQDLTLSCVV VLGTPKPSIV WIKDDKPVEE GPTIKIEGGG SLLRLRGGNP KDEGKYTCIA 960
  961 VSPAGNSTLH INVQLIKKPE FVYKPEGGIV FKPTISGMDE KHVAVVNSTH DVLDGEGFAI1020
 1021 PCVVSGTPPP IITWYLDGRP ITPNSRDFTV TADNTLIVRK ADKSYSGVYT CQATNSAGDN1080
 1081 EQKTTIRIMN TPMISPGQSS FNMVVDDLFT IPCDVYGDPK PVITWLLDDK PFTEGVVNED1140
 1141 GSLTIPNVNE AHRGTFTCHA QNAAGNDTRT VTLTVHTTPT INAENQEKIA LQNDDIVLEC1200
 1201 PAKALPPPVR LWTYEGEKID SQLIPHTIRE DGALVLQNVK LENTGVFVCQ VSNLAGEDSL1260
 1261 SYTLTVHEKP KIISEVPGVV DVVKGFTIEI PCRATGVPEV IRTWNKNGID LKMDEKKFSV1320
 1321 DNLGTLRIYE ADKNDIGNYN CVVTNEAGTS QMTTHVDVQE PPIILPSTQT NNTAVVGDRV1380
 1381 ELKCYVEASP PASVTWFRRG IAIGTDTKGY VVESDGTLVI QSASVEDATI YTCKASNPAG1440
 1441 KAEANLQVTV IASPDIKDPD VVTQESIKES HPFSLYCPVF SNPLPQISWY LNDKPLIDDK1500
 1501 TSWKTSDDKR KLHVFKAKIT DSGVYKCVAR NAAGEGSKSF QVEVIVPLNL DESKYKKKVF1560
 1561 AKEGEEVTLG CPVSGFPVPQ INWVVDGTVV EPGKKYKGAT LSNDGLTLHF DSVSVKQEGN1620
 1621 YHCVAQSKGN ILDIDVELSV LAVPIVGEDD NLEVFLGKDI SLSCDLQTES DDKTTFVWSI1680
 1681 NGSESDRPDN VQIPSDGHRL YITDAKPENN GKYMCRVTNS AGKAERTLTL DVLEPPVFVE1740
 1741 PVFEANQKLI GNNPIILQCQ VTGNPKPTVI WKIDGNDVDK SWLFDESLSL LRIEKLTGKS1800
 1801 AQISCTAENK AGTASRDFFI QNIAAPTFKN EGDQETIFRE SETITLDCPV SLGDFQITWM1860
 1861 KQGLPLTEND AIFTLDNTRL TILNANRDHE DIYTCVANNT AGQVSKDFDV VVQVLPKIKN1920
 1921 AVVTLEINEG EEIILTCDAE GNPTPTAKWD FNQGDLPKEA VFVNNNHTVV VNNVTKYHTG1980
 1981 VYKCYATNKV GQAVKTINVH VRTKPRFESG LTESELTVNL TRSITLECDV DDAIGVGISW2040
 2041 TVNGKPFLAE TDGVQTLAGG RFLHIVSAKT DDHGSYACTV TNEAGVATKT FNLFVQVPPT2100
 2101 IVNEGGEYTV IENNSLVLPC EVTGKPNPVV TWTKDGRPVG DLKSVQVLSE GQQFKIVHAE2160
 2161 IAHKGSYICM AKNDVGTAEI SFDVDIITRP MIQKGIKNIV TAIKGGALPF KCPIDDDKNF2220
 2221 KGQIIWLRNY QPIDLEAEDA RITRLSNDRR LTILNVTEND EGQYSCRVKN DAGENSFDFK2280
 2281 ATVLVPPTII MLDKDKNKTA VEHSTVTLSC PATGKPEPDI TWFKDGEAIH IENIADIIPN2340
 2341 GELNGNQLKI TRIKEGDAGK YTCEADNSAG SVEQDVNVNV ITIPKIEKDG IPSDYESQQN2400
 2401 ERVVISCPVY ARPPAKITWL KAGKPLQSDK FVKTSANGQK LYLFKLRETD SSKYTCIATN2460
 2461 EAGTDKRDFK VSMLVAPSFD EPNIVRRITV NSGNPSTLHC PAKGSPSPTI TWLKDGNAIE2520
 2521 PNDRYVFFDA GRQLQISKTE GSDQGRYTCI ATNSVGSDDL ENTLEVIIPP VIDGERREAV2580
 2581 AVIEGFSSEL FCDSNSTGVD VEWQKDGLTI NQDTLRGDSF IQIPSSGKKM SFLSARKSDS2640
 2641 GRYTCIVRNP AGEARKLFDF AVNDPPSISD ELSSANIQTI VPYYPVEINC VVSGSPHPKV2700
 2701 YWLFDDKPLE PDSAAYELTN NGETLKIVRS QVEHAGTYTC EAQNNVGKAR KDFLVRVTAP2760
 2761 PHFEKEREEV VARVGDTMLL TCNAESSVPL SSVYWHAHDE SVQNGVITSK YAANEKTLNV2820
 2821 TNIQLDDEGF YYCTAVNEAG ITKKFFKLIV IETPYFLDQQ KLYPIILGKR LTLDCSATGT2880
 2881 PPPTILFMKD GKRLNESDEV DIIGSTLVID NPQKEVEGRY TCIAENKAGR SEKDMMVEVL2940
 2941 LPPKLSKEWI NVEVQAGDPL TLECPIEDTS GVHITWSRQF GKDGQLDMRA QSSSDKSKLY3000
 3001 IMQATPEDAD SYSCIAVNDA GGAEAVFQVT VNTPPKIFGD SFSTTEIVAD TTLEIPCRTE3060
 3061 GIPPPEISWF LDGKPILEMP GVTYKQGDLS LRIDNIKPNQ EGRYTCVAEN KAGRAEQDTY3120
 3121 VEISEPPRVV MASEVMRVVE GRQTTIRCEV FGNPEPVVNW LKDGEPYTSD LLQFSTKLSY3180
 3181 LHLRETTLAD GGTYTCIATN KAGESQTTTD VEVLVPPRIE DEERVLQGKE GNTYMVHCQV3240
 3241 TGRPVPYVTW KRNGKEIEQF NPVLHIRNAT RADEGKYSCI ASNEAGTAVA DFLIDVFTKP3300
 3301 TFETHETTFN IVEGESAKIE CKIDGHPKPT ISWLKGGRPF NMDNIILSPR GDTLMILKAQ3360
 3361 RFDGGLYTCV ATNSYGDSEQ DFKVNVYTKP YIDETIDQTP KAVAGGEIIL KCPVLGNPTP3420
 3421 TVTWKRGDDA VPNDSRHTIV NNYDLKINSV TTEDAGQYSC IAVNEAGNLT THYAAEVIGK3480
 3481 PTFVRKGGNL YEVIENDTIT MDCGVTSRPL PSISWFRGDK PVYLYDRYSI SPDGSHITIN3540
 3541 KAKLSDGGKY ICRASNEAGT SDIDLILKIL VPPKIDKSNI IGNPLAIVAR TIYLECPISG3600
 3601 IPQPDVIWTK NGMDINMTDS RVILAQNNET FGIENVQVTD QGRYTCTATN RGGKASHDFS3660
 3661 LDVLSPPEFD IHGTQPTIKR EGDTITLTCP IKLAEDIADQ VMDVSWTKDS RALDGDLTDN3720
 3721 VDISDDGRKL TISQASLENA GLYTCIALNR AGEASLEFKV EILSPPVIDI SRNDVQPQVA3780
 3781 VNQPTIMRCA VTGHPFPSIK WLKNGKEVTD DENIRIVEQG QVLQILRTDS DHAGKWSCVA3840
 3841 ENDAGVKELE MVLDVFTPPV VSVKSDNPIK ALGETITLFC NASGNPYPQL KWAKGGSLIF3900
 3901 DSPDGARISL KGARLDIPHL KKTDVGDYTC QALNAAGTSE ASVSVDVLVP PEINRDGIDM3960
 3961 SPRLPAQQSL TLQCLAQGKP VPQMRWTLNG TALTHSTPGI TVASDSTFIQ INNVSLSDKG4020
 4021 VYTCYAENVA GSDNLMYNVD VVQAPVISNG GTKQVIEGEL AVIECLVEGY PAPQVSWLRN4080
 4081 GNRVETGVQG VRYVTDGRML TIIEARSLDS GIYLCSATNE AGSAQQAYTL EVLVSPKIIT4140
 4141 STPGVLTPSS GSKFSLPCAV RGYPDPIISW TLNGNDIKDG ENGHTIGADG TLHIEKAEER4200
 4201 HLIYECTAKN DAGADTLEFP VQTIVAPKIS TSGNRYINGS EGTETVIKCE IESESSEFSW4260
 4261 SKNGVPLLPS NNLIFSEDYK LIKILSTRLS DQGEYSCTAA NKAGNATQKT NLNVGVAPKI4320
 4321 MERPRTQVVH KGDQVTLWCE ASGVPQPAIT WYKDNELLTN TGVDETATTK KKSVIFSSIS4380
 4381 PSQAGVYTCK AENWVASTEE DIDLIVMIPP EVVPERMNVS TNPRQTVFLS CNATGIPEPV4440
 4441 ISWMRDSNIA IQNNEKYQIL GTTLAIRNVL PDDDGFYHCI AKSDAGQKIA TRKLIVNKPS4500
 4501 DRPAPIWVEC DEKGKPKKTE YMIDRGDTPD DNPQLLPWKD VEDSSLNGSI AYRCMPGPRS4560
 4561 SRTVLLHAAP QFIVKPKNTT AAIGAIVELR CSAAGPPHPT ITWAKDGKLI EDSKFEIAYS4620
 4621 HLKVTLNSTS DSGEYTCMAQ NSVGSSTVSA FINVDNNILP TPKPSSNQKN VAVITCYERN4680
 4681 QAYSRGLTWE YNGVPMPKNL AGIHFMNNGS LVILDTSSLK EGDLELYTCK VRNRRRHSIP4740
 4741 HLTSAFEGVP EVKTIDKVEV NNGDSVVLDC EVTSDPLTTH VVWTKNDQKM LDDDAIYVLP4800
 4801 NNSLVLLNVE KYDEGVYKCV ASNSIGKAFD DTQLNVYEGD FLPLTGFEGS GINIDDSSNA4860
 4861 GGSSRREAYK KENEDASTTT ITTTSPTTTT TETPLTTTII PALITLPAKQ YPTDDYHEGS4920
 4921 ANDDGFGPTT QDSLFEFNPP LHPEISVVNT DCAGTINENG DCVDKDGKTH NLKILTGENH4980
 4981 CPEGFAMNPH TRICEDLDEC AFYQPCDFEC INYDGGFQCN CPLGYELAEE GCRDVNECES5040
 5041 VRCEDGKACF NQLGGYECID DPCPANYSLV DDRYCEPECE NCTSTPIQVH MLAIPSGLPI5100
 5101 SHIATLTAYD KSGRVLNDTT YAISDTGAPL ARGRMTSGPF TIKAVKRGHA QVWTNRVLAA5160
 5161 GDHHKVRVRA HSDHATNELH APKETNFLVL INVGQYPF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle