YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE18554
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	52	0.88
Transmembrane Helix	53	70	0.89
Non-Cytoplasmic	71	81	0.75
Transmembrane Helix	82	104	0.91
Cytoplasmic	105	124	0.73
Transmembrane Helix	125	147	0.87
Non-Cytoplasmic	148	257	0.73
Transmembrane Helix	258	279	0.87
Cytoplasmic	280	286	0.62
Transmembrane Helix	287	307	0.91
Non-Cytoplasmic	308	334	0.71
Transmembrane Helix	335	356	0.86
Cytoplasmic	357	366	0.61
Transmembrane Helix	367	390	0.86
Non-Cytoplasmic	391	429	0.74
Transmembrane Helix	430	451	0.92
Cytoplasmic	452	468	0.87
Transmembrane Helix	469	491	0.90
Non-Cytoplasmic	492	498	0.85
Transmembrane Helix	499	521	0.93
Cytoplasmic	522	550	0.96
Transmembrane Helix	551	572	0.93
Non-Cytoplasmic	573	592	0.92
Transmembrane Helix	593	615	0.95
Cytoplasmic	616	706	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSPTQRRSP SDSSAAEDQR IATTIVRDSG SSKEIEESQA DPCRGAWGNQ IEFLLSTLGM  60
   61 AVGLGNIWRF PTRAYNNGGS AFLVPYVACA LLFGLPAVYL EFLLGQYHRT TAPIIFRRFA 120
  121 PILQGVGWMA VAVSSLVAIY YIIIIGWSTV YMASIVMGHT SKWNRCGNSW NNAESCVDSG 180
  181 LQPLCASFNA TGNETSPVWA NLSSEGRGKF YIYLNTSCYD KVDLEFNKTK MIAATEQYFF 240
  241 DYVVKPTDGF LEFSSINFKS FFGMNACWLI VVLILWKGVG YMGKASYVIV TLPYFIIILL 300
  301 FFRGITLDGA EDGIYYYLGN PDWSKVFMPA TWGEALKQLC FSLGIGYGGL IGMASFSKPN 360
  361 NNCFRDALIV IIGDTMMSLV GGAAVFSTLG FLAKKKGCSV AEVVNDGFSL AFVAFPEALG 420
  421 RMPLPELWSF LFFLMLFFLG ISTEVAYVNV FCSSICDQFV NLRKRKWLVA VLWCLVLYVL 480
  481 GVVMVTDGGF YWFIMFDEYA AGVSSCCAVT AEVLIVAYVY GRRNQLADMK EMFGESKNKC 540
  541 TSWIGQHSPY FGFNWMFVTP VLGSILIVLA SIRQYPYQTD ENKPNMYPLA FDIVGWAVCL 600
  601 LPMALVPIFA FCAFVEFKRK GHDLRALFMK QRQLKSFGRI YQTMASKDRA KQKILPDREP 660
  661 WDDAPTGHQF VASPDFQSSS QSTRSERPSE RSNYLNSAAS VHSKTQ