YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-124
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIDSRIKAY RFVGYAALTF STIAVLSVCI TLPMMYNYIH HTRKVMHSDI VECKSEAQRL  60
   61 FSQVNRIPDL MMAHNRTARQ AGEGNGQCEG CCLPGAQGPP GTPGSAGRPG KPGAPGLNGN 120
  121 PGRPPKEPCE PLTPPPCKPC PEGPPGPAGP PGPDGNKGPL GPPGPPGPEG PNGEPGNKGP 180
  181 AGPPGPGGKP GPAGPPGENG NNGEPQPGAP GEPGQPGQPG QRGPAGEPGK DGSPGGQGEK 240
  241 GASGEPGQPG RDGQPGHPGQ PGKDGRPGEK GVCPKYCALD GGVFFEDGHR R

Type	Start	End	Confidence
Cytoplasmic	1	11	0.76
Transmembrane Helix	12	36	0.86
Non-Cytoplasmic	37	291	0.80