YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	maa-1
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVFETAVFI VQNLPKDGPI KTSTDEKLNF YALFKQATHG KCDLPKPSFY DIQGVYKWNA  60
   61 WNKLDNMTMD EAKQAYVDSI VQKIREVQKE YKTEEWMKGD TYELLAPKFE VLGVLEGKDQ 120
  121 AVEHPKKTEN KETENETDNV ETPNSSACIL SDNEYADAID DEIQSRSSSF TEPHNSFNRR 180
  181 ISRQSSLKSS CHRLEKELKV ITESIDKLGK AVEERHNLLI GLMKKATVYV LVPRVTSWKT 240
  241 IIFFVFWPFV TKFLLRWLRR FLRLLM

Type	Start	End	Confidence
Non-Cytoplasmic	1	237	0.86
Transmembrane Helix	238	256	0.82
Cytoplasmic	257	266	0.70