YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE18466
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.83
Transmembrane Helix	12	31	0.94
Cytoplasmic	32	57	0.87
Transmembrane Helix	58	79	0.88
Non-Cytoplasmic	80	87	0.85
Transmembrane Helix	88	110	0.93
Cytoplasmic	111	129	0.94
Transmembrane Helix	130	153	0.87
Non-Cytoplasmic	154	166	0.79
Transmembrane Helix	167	186	0.90
Cytoplasmic	187	194	0.59
Transmembrane Helix	195	213	0.84
Non-Cytoplasmic	214	248	0.92
Transmembrane Helix	249	271	0.88
Cytoplasmic	272	286	0.90
Transmembrane Helix	287	310	0.92
Non-Cytoplasmic	311	343	0.92
Transmembrane Helix	344	369	0.77
Cytoplasmic	370	391	0.92
Transmembrane Helix	392	411	0.93
Non-Cytoplasmic	412	419	0.68
Transmembrane Helix	420	442	0.93
Cytoplasmic	443	449	0.92
Transmembrane Helix	450	470	0.96
Non-Cytoplasmic	471	518	0.96
Transmembrane Helix	519	539	0.93
Cytoplasmic	540	577	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKDVSLHWL DYAIFGLSIG LSLSTGVYHA IKSRIILRRG DRTAKEEYLM GGRQLPPLPV  60
   61 ALSLLTTFLS GILMLGVPAE MFQRGAQIWL NFVIGVASSI VTCFVFLPVF HKMKSTCLHE 120
  121 YFIHRYNSIL IRRLFSLLFL LFTIVYMSVV LYAPSVALSP VLQINKWYLV LIFGCTTTLY 180
  181 TCLGGLKAVV WTDSLQAVIM YTGVFTLIYK GLSHPRVGGL ERVLSIAWDS GRISELGRMD 240
  241 WRIDQYNSLW INLFSGTIVW LASFGVNQLA IQRYASLPSL KVAQSIIIYT LAPFTVLCSI 300
  301 VAFVGFIALA YFYNCNPLET GEVKESDHIT ISFARDILQP TPGLFGLYVS CIMSATLSTL 360
  361 SSGMNSMAAA IYEDFLKNSL DGKITDTGAT RLNKIIVLIC GLSSTGLAFL AEVLGGSLRI 420
  421 CISVMGAMSG PMVAIFVLAL FFPKSGSKSC LISFFLSNLF CLIICIANYI QDPYHDLFLP 480
  481 TNTTLEGCNG NSNFTIRMMP TYDAHYGNPD TLYISRISTY SYAGVGFVLM IIIGWIASLF 540
  541 EESDHKVEKI RHLTFSGRNE PWPDTHHEFD HFLKEIK