YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE18426
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTYEDYVCV PYPNNLWWLP IVILQFIVVI AGCFSHFIFV SLVVIPHKFG IYLRMAFGMI  60
   61 STMMLIMLLT STGAFLITLA HGKFIEDCEI SSIHFRKQLL FVHSFGEYFF VACELLGTIE 120
  121 RVISTLNPKF RKSKFFSAVF IVGCIIGMLS AFLYIYLVRI SYDSTLFAIG FGSLTMMEIL 180
  181 NGCIVFSLFY TAKEIYQNQR SAPLHVRYEL FQSYAYCRCA AASFTARVFI IAYVYLKLAG 240
  241 FFGGDMDSGF FYMMNLFINL YCLVYPWTIM LYHRKIKSQI KQVLATKNWF RSKRIKEENT 300
  301 KTLYTIDGRR MNRMSTDDHF NQLNAFWNLS TLPSPTPSKN HA

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.89
Transmembrane Helix	21	44	0.90
Cytoplasmic	45	54	0.75
Transmembrane Helix	55	77	0.87
Non-Cytoplasmic	78	98	0.86
Transmembrane Helix	99	119	0.82
Cytoplasmic	120	134	0.83
Transmembrane Helix	135	158	0.91
Non-Cytoplasmic	159	166	0.88
Transmembrane Helix	167	190	0.91
Cytoplasmic	191	213	0.91
Transmembrane Helix	214	236	0.87
Non-Cytoplasmic	237	249	0.86
Transmembrane Helix	250	271	0.91
Cytoplasmic	272	342	0.99