YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	inx-13
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFLDAFLKG LHKQGDDDSI DRLNYYWTPM LLVIFALTLS AKQYVGQPIQ CWIPAQFTGA  60
   61 WEQYSENYCF VQNTYFISPD KYIPDSEIDR EGAEIGYYQW VPFILGLQAI LFYLPSLFWR 120
  121 LMNFNSGVAL KKMLFGAKKA DRVDEKARNE AAKSTGAHLY ESLTLQSRFA KYTSAFTYGG 180
  181 SYLTYLYLFV KFLYLVQIVF QFIILNNFLG TSYTFWGLGI LSDILNGREW EESGHFPRVT 240
  241 MCDFEVRVLG NKHRHTVQCV LMINMFNEKV YVFLWFWLVI VGVATFLNLV NWTRKLMFRS 300
  301 ARKAHIKSYL QIEDNFSDDN SRNGQILDKF VDYKLKSDGV FITHLIDNNG GSVFSHDVIV 360
  361 DMWDRFLQDE DNRSQKKQPA EFREI

Type	Start	End	Confidence
Cytoplasmic	1	22	0.87
Transmembrane Helix	23	45	0.64
Non-Cytoplasmic	46	99	0.68
Transmembrane Helix	100	122	0.82
Cytoplasmic	123	186	0.67
Transmembrane Helix	187	216	0.68
Non-Cytoplasmic	217	270	0.92
Transmembrane Helix	271	292	0.93
Cytoplasmic	293	385	0.96