YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE18337
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.42
Transmembrane Helix	8	27	0.68
Cytoplasmic	28	55	0.52
Transmembrane Helix	56	75	0.58
Non-Cytoplasmic	76	81	0.69
Transmembrane Helix	82	102	0.89
Cytoplasmic	103	110	0.75
Transmembrane Helix	111	130	0.93
Non-Cytoplasmic	131	136	0.64
Transmembrane Helix	137	156	0.77
Cytoplasmic	157	162	0.61
Transmembrane Helix	163	184	0.67
Non-Cytoplasmic	185	194	0.77
Transmembrane Helix	195	214	0.94
Cytoplasmic	215	248	0.95
Transmembrane Helix	249	272	0.83
Non-Cytoplasmic	273	290	0.83
Transmembrane Helix	291	308	0.93
Cytoplasmic	309	329	0.82
Transmembrane Helix	330	349	0.97
Non-Cytoplasmic	350	354	0.87
Transmembrane Helix	355	375	0.93
Cytoplasmic	376	393	0.75
Transmembrane Helix	394	413	0.85
Non-Cytoplasmic	414	423	0.87
Transmembrane Helix	424	443	0.94
Cytoplasmic	444	659	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNSPVPVRF LILICATLCL TSILSNMNTY NFTKICMQDD NSTSTSKVNY TKSESNFLQS  60
   61 CVAIGSLAAS IPFSISFQHL PHKPVFIVAG IISGGMTSIV AAKKKNIGGR VFFSTALIPL 120
  121 ASTIGYGWFV AARICQGMAF SATFPLAGSI TANWATPYEH GVFIGLLTGN TQLSNIFTMP 180
  181 VSGWLCSSSG GWTSVYYVHA GVSLVTFSLF FLFFKCSPSE HSWVGEKELE RIREGKSGKK 240
  241 VSRPKNLPFR HILTSLSLWA CWIASFGDLI TVQLVSQFNP QYMKNYLNYD VLSSGFLAAL 300
  301 PIIFQFFTKL SSGIISDYIK FISETLKTKI FNTIALAVAA VFFIVLAFIP QEKHLLAIII 360
  361 MICAESVMGC NTAGFNKCAT LHSQQYAYFA MQQIMNIWAC TIFIEPFFVN MIVTDDTFTD 420
  421 WRNCFLAHAG LLLFVNTIFC LFADASPAKW TRLQDDDVAI EEEKEEYSGS IEDIIKFLPP 480
  481 SPPSYVMAPM IRMAPAPPPP PMPPMVFQMS PSPQMSPQMS PQMSQQRNYP QLQMMASQTP 540
  541 SMAPLPPPMP PIVGSSSAIS SIQNLLEKQQ NQYETAPETP RWDRQEPEYQ HIDEQVVAPD 600
  601 VVVADTVDEK STSSEKVEKV HENERLARMD LKYEEPEVIL KKRKNDDVIN GLDFFLEEK