YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	fat-6
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVKTRSNIA KKIEKDGGPE TQYLAVDPNE IIQLQEESKK IPYKMEIVWR NVALFAALHF  60
   61 AAAIGLYQLI FEAKWQTVIF TFLLYVFGGF GITAGAHRLW SHKSYKATTP MRIFLMILNN 120
  121 IALQNDVIEW ARDHRCHHKW TDTDADPHNT TRGFFFAHMG WLLVRKHPQV KEQGAKLDMS 180
  181 DLLSDPVLVF QRKHYFPLVI LCCFILPTII PVYFWKETAF IAFYTAGTFR YCFTLHATWC 240
  241 INSAAHYFGW KPYDSSITPV ENVFTTIAAV GEGGHNFHHT FPQDYRTSEY SLKYNWTRVL 300
  301 IDTAAALGLV YDRKTACDEI IGRQVSNHGC DIQRGKSIM

Type	Start	End	Confidence
Cytoplasmic	1	46	0.99
Transmembrane Helix	47	70	0.90
Non-Cytoplasmic	71	77	0.83
Transmembrane Helix	78	100	0.90
Cytoplasmic	101	193	0.94
Transmembrane Helix	194	215	0.90
Non-Cytoplasmic	216	220	0.82
Transmembrane Helix	221	241	0.69
Cytoplasmic	242	339	0.78