YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	inx-15
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFVVNLVTQ YTVQRHEDDF IDRLNFQYSA YVFALSALVI GYHTYFGRAI SCWTPAEFKG  60
   61 GWNEYTTDYC LIENTYYVPL EDPNMPPERY REEKELSYYQ WVQFILVFLA FLFYLPYLYW 120
  121 STVNWWSGLQ VKAVVDVACN LDKTDVGKRN AGIEKIASHL KKYIDRQGRK SPIPLIPNII 180
  181 GRNWVSFNYI LTKFLFLVNL IAQMFLIHFF LGFDLDDFIS LRVGFGSNWI ANGIFPRQTM 240
  241 CDFEIRKKGS IQKYSVQCVL SMNMLNEKVF LALFYWIIAL FFLTVWNLFT SFQHFFHASS 300
  301 RKEFVRRMLS AGGHTLTDGG HGEEKVPLVE RPDGTYSNDY NRVLSINPDI VVVLHLIAKN 360
  361 AGDNVCQNVV DMLFQKLSEK SQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.43
Transmembrane Helix	28	46	0.70
Cytoplasmic	47	98	0.64
Transmembrane Helix	99	120	0.89
Non-Cytoplasmic	121	188	0.65
Transmembrane Helix	189	212	0.87
Cytoplasmic	213	269	0.59
Transmembrane Helix	270	290	0.92
Non-Cytoplasmic	291	382	0.62