YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE18091
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.88
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.87
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	94	0.94
Transmembrane Helix	95	114	0.91
Cytoplasmic	115	131	0.90
Transmembrane Helix	132	153	0.91
Non-Cytoplasmic	154	162	0.89
Transmembrane Helix	163	181	0.95
Cytoplasmic	182	189	0.80
Transmembrane Helix	190	208	0.87
Non-Cytoplasmic	209	216	0.77
Transmembrane Helix	217	238	0.94
Cytoplasmic	239	252	0.92
Transmembrane Helix	253	276	0.81
Non-Cytoplasmic	277	284	0.74
Transmembrane Helix	285	305	0.83
Cytoplasmic	306	320	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYIKWVVGCL LITCFVQLEA SPGDRSIWYQ ECTQVCISKY NCSTKFGTLD WARGDCFWCR  60
   61 YDCMWDTIGH FDSNFGVVPQ FHGKWPFLAI PLPFGFIIQE PASMIFSLLN LFTVYKMLRR 120
  121 FKKMQNLPNR TMWLVYAHVG MFTWISSSLF HMFDCDFTEK MDYFGAYSFV LFALYVSVIF 180
  181 TKQLQFLGRG GPKYIQILFA LVYLNHFMKM MQNFDYGYNM TCCIVFSLIT TCLYVHHLYY 240
  241 RKRNLGSLQE SDIVLIRLII WANLSTALEI LDFTPVFWIF DSHSLFHLAT IPIPIWWSDF 300
  301 LALYYDLDVA SGKRSVLKMA