YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE18025
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAGSWKTLL YLKGKTQGIK LCIDPEHFLD DKRAPICKEK FELYIMPRNG LVIWPKSGRA  60
   61 SMMELKPRAI ADAEIYVIEV GFGYGDKVNG KLPGEVCTKF MSNSFLKYPG LSVESALSEM 120
  121 SNRNFWPKFS ESKTFFLSLK KKQISLNTAF FFYVANMFRE VVVSDSEWWD ATAASKVAFF 180
  181 FEKSDDLKEN KGIISQNIEI GKTFISKKDV GKVHKIDGEG ESGDETGEGK EKLLAPPPPK 240
  241 IEPNIPTTTV PPVRYINNPD YQTGSNEEEN PNTYTPGKWW AWGLFVGFII GSLLGTVIIG 300
  301 GIFYVLRRTV YGFWYRGMYK RYGCDASGTT GGITGVGFGN TTTGAITVGG TTGGATTAGT 360
  361 TGGTTGSSTT TGGASTIAIS NGCSEQNKRR AIGALGTCVM TGYLSSLFH

Type	Start	End	Confidence
Non-Cytoplasmic	1	279	0.74
Transmembrane Helix	280	306	0.90
Cytoplasmic	307	325	0.75
Transmembrane Helix	326	346	0.67
Non-Cytoplasmic	347	357	0.58
Transmembrane Helix	358	379	0.64
Cytoplasmic	380	390	0.73
Transmembrane Helix	391	407	0.59
Non-Cytoplasmic	408	409	0.53