YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE18022
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	88	0.88
Transmembrane Helix	89	116	0.82
Non-Cytoplasmic	117	126	0.64
Transmembrane Helix	127	146	0.53
Cytoplasmic	147	171	0.58
Transmembrane Helix	172	196	0.84
Non-Cytoplasmic	197	206	0.58
Transmembrane Helix	207	233	0.84
Cytoplasmic	234	244	0.63
Transmembrane Helix	245	270	0.74
Non-Cytoplasmic	271	276	0.50
Transmembrane Helix	277	298	0.90
Cytoplasmic	299	307	0.55
Transmembrane Helix	308	329	0.86
Non-Cytoplasmic	330	338	0.41
Transmembrane Helix	339	356	0.44
Cytoplasmic	357	401	0.85
Transmembrane Helix	402	423	0.92
Non-Cytoplasmic	424	439	0.89
Transmembrane Helix	440	463	0.90
Cytoplasmic	464	472	0.90
Transmembrane Helix	473	494	0.91
Non-Cytoplasmic	495	507	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGGGGIGDG KKDYQSAVHE GLTTFDQLGI ALEDVGKSMD AETATPGGSL FSRVIFRFRN  60
   61 ENSSLKSRTY DHSNDLVNMS VIPAESSYVL FFQVLFPFAV AGLGMVFAGL VLSIVVTWPL 120
  121 FEEIPEILIL VPALLGLKGN LEMTLASRLS TLANLGHMDS SKQRKDVVIA NLALVQVQAT 180
  181 VVAFLASAFA AALAFIPSGD FDWAHGALMC ASSLATACSA SLVLSLLMVV VIVTSRKYNI 240
  241 NPDNVATPIA ASLGDLTTLT VLAFFGSVFL KAHNTESWLN VIVIVLFLLL LPFWIKIANE 300
  301 NEGTQETLYN GWTPVIMSML ISSAGGFILE TAVRRYHSLS TYGPVLNGVG GNLAAVQASR 360
  361 LSTYFHKAGT VGVLPNEWTV SRFTSVQRAF FSKEWDSRSA RVLLLLVVPG HICFNFLIQL 420
  421 FTLTSKNNVT PHGPLFTSLY MIAAIIQVVI LLFVCQLLVA LLWKWKIDPD NSVIPYLTAL 480
  481 GDLLGTGLLF IVFLTTDHFD PKELTSS