YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE17945
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNRVYATVH LTDRTLQLYL TNIFNCLATP VNFLAFYLII KHSRRETKLF KYTLLISHLF  60
   61 FYVSNIFYGT IANNLLNAFW SAAIWIFLFA GFVYFTFMIL VVRLKIVARK GKIFDFSNRS 120
  121 YYIFCVILAL YIIGPISAIW IRSYCTRDQQ IAYVTEHFPK NLMVFDNPSV HVDVSVSNQR 180
  181 MLIILMLILI FSGFMIYSLL YLMIVLEISK QATSKSLKTT NHQRKVTNSM VFQILIVGTT 240
  241 VFPAILLQIR NAFVEPEEDT RGNIWQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.89
Transmembrane Helix	18	40	0.86
Cytoplasmic	41	48	0.96
Transmembrane Helix	49	72	0.87
Non-Cytoplasmic	73	80	0.81
Transmembrane Helix	81	102	0.93
Cytoplasmic	103	120	0.89
Transmembrane Helix	121	141	0.95
Non-Cytoplasmic	142	181	0.97
Transmembrane Helix	182	205	0.94
Cytoplasmic	206	225	0.96
Transmembrane Helix	226	247	0.89
Non-Cytoplasmic	248	266	0.92