YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sre-31
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIKNTGTST FIWLPVYFYN EPLNLKLVIS IFELLSYILC GYILNLSIYV MSKIQLFHKN  60
   61 LMFLTVPLFA IWYELIIGKF ITIAYRLKIV NPGVELGEHT VFWTNDPDKI LEVGGSSGLE 120
  121 LLIFGGFLQW HTIYSIVFGI LAVATERTIA SVYIKDYESK KRIWIPIFLI IICQVLAIFM 180
  181 TFIVINRKVH PIIARLPFIF LCPISFAVWL FVKNKNKTLQ KEIQNPKRTR IFTLSQQCQV 240
  241 KENLRALRLG TRLVAVVLVY IMVCFLGIVS LTFDLIPGVC GHFVENFLFF HPIPICLTAM 300
  301 FSIPRWKTEF EKSYLPWKYR RNLRKIRQMS MEIEEDSIKK ISLETDLYFK QLAESWI

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.83
Transmembrane Helix	27	49	0.83
Cytoplasmic	50	60	0.75
Transmembrane Helix	61	83	0.81
Non-Cytoplasmic	84	126	0.92
Transmembrane Helix	127	145	0.88
Cytoplasmic	146	162	0.84
Transmembrane Helix	163	185	0.94
Non-Cytoplasmic	186	191	0.91
Transmembrane Helix	192	212	0.96
Cytoplasmic	213	252	0.96
Transmembrane Helix	253	273	0.93
Non-Cytoplasmic	274	286	0.77
Transmembrane Helix	287	306	0.89
Cytoplasmic	307	357	0.97