YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE17733
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGRIVSRLT ARLFLKNVWE EHGERAEPKD ALRAVLLIVL FALTFAAGMI ATFLKGEWAR  60
   61 SHILSFISCI GGGVFLGACL LDLLPDSIES FEKTKIATEF PVPLAFVAVG FLLVLTIDQV 120
  121 VKAAKDRNVF GHVGYHIHSH NHEHQRSEDG ESQEEGDEAA AQSSIGVAML VLALSVHALF 180
  181 EGLSLAVTSD ASQLLQIFGA LILHKCIMGF CLGVRLVQAN LTTPWIALAQ FLFSVQVLIG 240
  241 GLAGIGIMKF ISGGEQSFAA IVSSILQAIA CGTFLYITTF EVIPHELHNG KYRILKMFFI 300
  301 YMGFAIVVAF ILIFPEAS

Type	Start	End	Confidence
Cytoplasmic	1	31	0.72
Transmembrane Helix	32	54	0.91
Non-Cytoplasmic	55	61	0.62
Transmembrane Helix	62	84	0.92
Cytoplasmic	85	164	0.48
Transmembrane Helix	165	187	0.74
Non-Cytoplasmic	188	193	0.55
Transmembrane Helix	194	217	0.83
Cytoplasmic	218	225	0.56
Transmembrane Helix	226	248	0.90
Non-Cytoplasmic	249	257	0.52
Transmembrane Helix	258	280	0.90
Cytoplasmic	281	293	0.62
Transmembrane Helix	294	314	0.92
Non-Cytoplasmic	315	318	0.52