YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|134105085, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASHMFRKLAA ESFGTFWLVF GGSGSAVLAA GFPELGIGFA GVALAFGLTV LTMAFAVGHI  60
   61 SGGHFNPAVT IGLWAGGRFP AKEVVGYVIA QVVGGIVAAA LLYLIASGKT GFDAAASGFA 120
  121 SNGYGEHSPG GYSMLSALVV ELVLSAGFLL VIHGATDKFA PAGFAPIAIG LACTLIHLIS 180
  181 IPVTNTSVNP ARSTAVAIFQ GGWALEQLWF FWVVPIVGGI IGGLIYRTLL EKRD

Type	Start	End	Confidence
Cytoplasmic	1	12	0.92
Transmembrane Helix	13	32	0.95
Non-Cytoplasmic	33	39	0.70
Transmembrane Helix	40	63	0.85
Cytoplasmic	64	83	0.85
Transmembrane Helix	84	106	0.94
Non-Cytoplasmic	107	130	0.93
Transmembrane Helix	131	152	0.93
Cytoplasmic	153	161	0.76
Transmembrane Helix	162	181	0.95
Non-Cytoplasmic	182	207	0.94
Transmembrane Helix	208	230	0.92
Cytoplasmic	231	234	0.99