YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE17670
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNNTLNITN QRTAAAMSQI YFLVVYQTAV MIVSLLGNLF LLFVIFRANQ VMKRRVSPVQ  60
   61 LLIIHTCVAD LLFALLSLGT EILTLRTYPQ YYGSNFVCKL MRYVQMFPMY ASPFLLVAIS 120
  121 ADRYQAICRP LAHFRSSRYR RPNWMAAIAW GLALVLSIPQ FFVWTKHSKT GRCSTIYGQN 180
  181 KNTVKITYVI MFNTLAWLLP SILAAVFYYC VCKAVRLSST KSVRAMDSQK RNGKYSSGAT 240
  241 EDYIEELRKK SKGFRQQMSE FDRKRVQTVR LTITIVACNF FLWMPFCLIN VIQALWPEIS 300
  301 HIMFINYVAI LGNLNSCLNP WIYILFNRSH VRKALCRSRR SFTEVTKKRS FENFECSSTA 360
  361 TMNNNYNNCH AYTAFSNRSQ LKFDSYATDS TSLKTNSN

Type	Start	End	Confidence
Non-Cytoplasmic	1	22	0.94
Transmembrane Helix	23	46	0.90
Cytoplasmic	47	60	0.88
Transmembrane Helix	61	83	0.89
Non-Cytoplasmic	84	105	0.85
Transmembrane Helix	106	124	0.89
Cytoplasmic	125	142	0.89
Transmembrane Helix	143	163	0.92
Non-Cytoplasmic	164	193	0.88
Transmembrane Helix	194	212	0.93
Cytoplasmic	213	270	0.95
Transmembrane Helix	271	292	0.90
Non-Cytoplasmic	293	302	0.76
Transmembrane Helix	303	325	0.90
Cytoplasmic	326	398	0.98