YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Oatp58Da-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	67	0.95
Transmembrane Helix	68	86	0.96
Non-Cytoplasmic	87	104	0.83
Transmembrane Helix	105	126	0.90
Cytoplasmic	127	133	0.89
Transmembrane Helix	134	156	0.91
Non-Cytoplasmic	157	206	0.96
Transmembrane Helix	207	226	0.96
Cytoplasmic	227	246	0.88
Transmembrane Helix	247	268	0.95
Non-Cytoplasmic	269	286	0.94
Transmembrane Helix	287	309	0.94
Cytoplasmic	310	352	0.99
Transmembrane Helix	353	374	0.94
Non-Cytoplasmic	375	389	0.89
Transmembrane Helix	390	413	0.90
Cytoplasmic	414	423	0.90
Transmembrane Helix	424	445	0.90
Non-Cytoplasmic	446	535	0.93
Transmembrane Helix	536	555	0.82
Cytoplasmic	556	575	0.86
Transmembrane Helix	576	598	0.93
Non-Cytoplasmic	599	628	0.93
Transmembrane Helix	629	649	0.94
Cytoplasmic	650	684	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEERGKVDL EKSETLPFIE KPFAISDKER ESAPENETEG EDGGKDTYCG FWIFKGPSMQ  60
   61 RFATEHMYVI LYGLAGCVMT MTFAYFNGTI TTLEKRYKIP TKVSGIISVG NDISTMLTAA 120
  121 ILGYYAGHRH RPRWMGIGLL TIVAFCLLTS SLHFLYGAGE DALQLTREFG QVNETLTNQE 180
  181 RDKKLCQPTA GGCVQEEVGL WVPQVFLFAA QLISGVGQAL FYTLGIAYMD DNTSKAKTPA 240
  241 MLSMSTFLRM LGPAIGYSLA AVCLRLYIEP TLEPLIGQED PRWLGAWWLG WLVLAAITLV 300
  301 SAILLFMFPK QLPSARKRRL QLKQDERKQS LPLNERSLAD MMKTVKKLSK NKVYVYNTMA 360
  361 SILYFFGYMV YWIFTPKYIE TQYRQSAAMA TMATGTVALG FSAAGILISG YVISKYKPSA 420
  421 RAMAAWNAIV DFVTVAGILC YVAIGCEGSD RLNTLTTLSA GNSCSASCHC DYVHYAPVCS 480
  481 ADNITFISAC HAGCSERTKD ALGRTIYTGC ECLGSSSLNS EPESQFAVDG TCPVDCFNEF 540
  541 LIFLGVMCFL KLVGASSKST NLLLALRCMP PDEKTFALGL GSMAASLLGF IPSPIFFGWL 600
  601 IDNYCLVWGK TCSNKGNCWL YDTKSMRYAL NLSAAFFIFL GGFLNIAVWY HAKNLKIFDE 660
  661 EESSPKDSLK NKEVEMKTID SNPE