YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE17616
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCQDEGGTLF DPQDPAVSGL IDALEQFQSF YTYFHRYACL FICIVGVFSN AIHIAVLSRP  60
   61 RMRRCAVNSV LTAVAFCDVI TMTSYSIYLM RFRFYETDHG YSYIWLVFLK FHVWSSMTLH 120
  121 AITLYMGGAL AFIRWQALGN IHSKWLQPRN SWQLFGVVSV VLSIVCLPTL VLHKIYEIES 180
  181 PEIETSTVSE VLRLSGQSIP KEVRYSLNFS TYSCAFFKFN LWMLAIVLKA IPCALLLWFT 240
  241 IALVVKLRQT DEKRNYLYSK SFRKHVKKTT VPDRTTYMLI IMLVVFLVTE LPQGFLALLN 300
  301 GLYTGDVNIY IYKNLSELLD FLSLINCSVD FLLYCVMSSR YRQTFGHMLI RVESWLRNHG 360
  361 ERRRLAREIK KKLPAPVGV

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.97
Transmembrane Helix	34	57	0.89
Cytoplasmic	58	65	0.92
Transmembrane Helix	66	89	0.88
Non-Cytoplasmic	90	110	0.94
Transmembrane Helix	111	133	0.87
Cytoplasmic	134	151	0.87
Transmembrane Helix	152	172	0.95
Non-Cytoplasmic	173	224	0.93
Transmembrane Helix	225	245	0.92
Cytoplasmic	246	275	0.94
Transmembrane Helix	276	297	0.88
Non-Cytoplasmic	298	317	0.89
Transmembrane Helix	318	338	0.82
Cytoplasmic	339	379	0.89