YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-138
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEDRQSVKK FAFFGIAAST VATLTVVMAV PMLCLYLQNI QSGLQDDLTF CKSRTDSLRG  60
   61 EYTRLAAYRD SAVATLRQKR STNEKCCSCG TGTAGPVGAP GDDGAPGSDG KAGKPGVNGK 120
  121 DADAQQIPTA DDFCFECEPS PVGPPGPPGP KGPDGESGAP GEPGPAGRPG NKGAPGPAGP 180
  181 VGADGEPGEL GAPGAPGVQR TVASPVGEPG EPGEQGPKGE AGQDGRPGQP GRQGPQGEPG 240
  241 QNGKDGEPGK DGVDGEPGKP GEDGPKGSCD HCPPPRTAPG Y

Type	Start	End	Confidence
Cytoplasmic	1	10	0.93
Transmembrane Helix	11	35	0.87
Non-Cytoplasmic	36	281	0.99