YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE17572
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRFCRRVQF WKNSVICLIV VFLFWKLQPN PKSSFVLEEH CVQSGWNIST LSPRNIDFGS  60
   61 SFIVSFANIH KSQKWIYLPK MKNVTWKHDI LMLVVSKTKN FARRNVLRST WMNKENSEMM 120
  121 KSGRMHALFF VGLVPGDQNL KKLVLEEAEI HGDMVVVDLE DTYDNLPFKT LALLLYGTSK 180
  181 ASQFKIIGKI DDDVMFFPDQ LLPMLDRNFV NSNTLSIYGH LSTAEELVLR NKTEPWYVPE 240
  241 TAYNCTVYPV YVMGPIYLVT KDAASLILDN ANHQQFMTVE DALITGIIAQ KLGIRRYSLP 300
  301 NVFRHRNDIT EGQDVLAWHV QTKNDSEYKS IFTKKLSEGT SFWHF

Type	Start	End	Confidence
Cytoplasmic	1	8	0.83
Transmembrane Helix	9	27	0.83
Non-Cytoplasmic	28	345	0.98