YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-113
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSLSTQRAG FTACVFSGGA ILVCLVYVPS LVTKIQNIND QLKVDSEEFR AMADYTWREL  60
   61 ITMRRGKRQA YGDSPKKTYP LHTAYVKEDA FVEGASTCSC NQNNGCPAGQ AGAAGKPGLD 120
  121 GEPGKSGEPG APGLAGIAPP VTIDPTKGCR VCPNGPRGPT GPPGETGPSG PEGPPGNPGR 180
  181 IGEHGREGYP GQQGIPGEPG KPGKLGEAGP NGRDGTRGQK GPIGPKGDSG PPGQKGPSGY 240
  241 PGRDGQRGND GESGPVGPSG QLGMPGEPGQ IGMVGAPGAP GQDASYCKCP ERNAGVNKFE 300
  301 PPPIEQPSYE PQPSTSQPAT YAPAPATPGP DAAVEAPRSP YRKWKWLQ

Type	Start	End	Confidence
Cytoplasmic	1	8	0.73
Transmembrane Helix	9	31	0.70
Non-Cytoplasmic	32	348	0.99