YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE17461
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQAKLRLTR YWMLARFATS VGFIENFLCS TKSQIRWFFI DLTRVCSISR FSAFFIQFSL  60
   61 INVRCLFTKF SFCFHLLVGV VRCNMFGGGS SGPVDTTLYT TLNVRPDASQ ADIKKSYFKL 120
  121 AKEYHPDKNP DHGDKFKEIS FAYEVLSSPE KRRLYDARGL EGVQGGGAGG GGGGFPGGLF 180
  181 SHFFGGAGGD DDDDDDDMGG HPFGGLFGGM GGMGRGGPRR RKFQDTVHPL NVTLEELYVG 240
  241 KTSKLKLSKK ALCKTCEGSG GKKGEKYKCD ACRGRGVKTI VQQIGPGMLQ QMQVHCDACK 300
  301 GSGGKVPAGD KCKGCHGEKY ENVSKILEVH VLPGMKHNDK ITFKGDGDQS DPDGEPGDVV 360
  361 IVIQQKDPSL ICSE

Type	Start	End	Confidence
Cytoplasmic	1	11	0.80
Transmembrane Helix	12	29	0.74
Non-Cytoplasmic	30	47	0.62
Transmembrane Helix	48	68	0.48
Cytoplasmic	69	161	0.70
Transmembrane Helix	162	180	0.68
Non-Cytoplasmic	181	197	0.83
Transmembrane Helix	198	217	0.66
Cytoplasmic	218	374	0.75