YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-102
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQAVLGVVN TVTAVSVITA ILLSVAILVD INNFSDEVSQ DLTQFRGYYD DAWRTMMVNE  60
   61 GMKGLTARIS RQAGYATGGS QQCNCGSQAA GCPAGPPGAA GEDGTPGEPG TDGEDGGNGM 120
  121 PGVAQMAMDA NGGACIKCPA GEPGPPGPEG PAGPAGPAGN AGADGEAGAE GPAGEAGPPG 180
  181 PPGPDGKPGA AGSDGEAGAP GTKTTNAPGE PGPAGPPGPP GPNGEAGAGS GPGPEGPAGP 240
  241 PGPNGKDGEA GAPGKDGDAG ADGAPGTDAA YCPCPPRSAA LGAGGGAEPA GAAPEAAAAA 300
  301 PEAAPEAAPA AEGAGGGAEP AGAAAPDAAA AAPEAAPAEA APAAEGAGGG AEPAGAAPDA 360
  361 AAAAPEAAPA EAAPAAEGAG GGAEPAGAAA PDAAAAAPEA AAAPEAAPAA EGAGGGAEPA 420
  421 GAAPEAAAAA PEGAGGGEAP PTNGKGGEAS PAYPTGQSSY

Type	Start	End	Confidence
Cytoplasmic	1	7	0.64
Transmembrane Helix	8	29	0.67
Non-Cytoplasmic	30	460	0.99