YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE17407
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQNPVYSP LPLSGTNISQ AEARSHPSKK IVALVLVGTL FFLFSFFLAV ALFGGSSTDS  60
   61 DLEPDHQTLT TQNEPIQLGN HRYFAFKYEI VRGKYSHTNK DGSAVKPFIV KNVERHSDEE 120
  121 PYDVYLQKKK RNEEGMIYWK FNLTSTGKVL ETLVIRMVGI NQTLNGGGKA EACLDTFENC 180
  181 MEIPVNQDLI IDKPQADTLF LGIKMYKNMK VFGHAEKCME CRELESGFLV KAYWAQTHLL 240
  241 NISTTYHQGS GPAFALTPKT GENSAKFKYN FINNSYSHTQ PDGSPIRLFN FNGMERVEDY 300
  301 TESDVFLRRE IPEKKGNIGW ALDLKIDGKS VEKVVIRMIG IEEIANGGGT ARACGHYPTI 360
  361 YPKCADIPIN GTFTFTNYPL DRLFLDIELD EDIQIFKTKL DDESSVENVS VEVYWSECIG 420
  421 YCRVTVGVLS ALSFRITAGL LLGTVESPAR IILLIWFFII FFN

Type	Start	End	Confidence
Cytoplasmic	1	30	0.97
Transmembrane Helix	31	54	0.91
Non-Cytoplasmic	55	437	0.98
Transmembrane Helix	438	460	0.66
Cytoplasmic	461	463	0.49