YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	npr-12
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPPNSTGQW TEIHCDWFAE MQNYQNSLYK INFDGSPIVP MYGLVCSFGA LANFIVLLAF  60
   61 VRTANLRNLR NSFIVNLAFS DLILCVVTAP VTLYTSLNLF WPFGDWSCKF LAGVQAVNTF 120
  121 VSSLTLAFIA MDRVLLTLCP VRWRLAATAP LLCYGVVWII SIIVALPYAL AVSSKLAPFD 180
  181 PWSDRATPKM LTYCNRQVPE ICAEMQEAWD NAIVSKTTYT FVVLGIQYIL PLAALAYAYF 240
  241 QIGSTIQKRS KVSRTVDTTR RMQMQNRNRR ALLLLFLLVL TYAVCWAPMN IYHVLNGLEI 300
  301 INYSQNMYIF CHLVGISSTC VNPIVYALVN ESFRNALQSM ILQFRPCYVT TTGTAATNVY 360
  361 AYSATSKAEN VTLMRDPFST TPRPNERPDS V

Type	Start	End	Confidence
Non-Cytoplasmic	1	37	0.99
Transmembrane Helix	38	61	0.90
Cytoplasmic	62	72	0.87
Transmembrane Helix	73	94	0.91
Non-Cytoplasmic	95	110	0.84
Transmembrane Helix	111	131	0.88
Cytoplasmic	132	150	0.75
Transmembrane Helix	151	172	0.92
Non-Cytoplasmic	173	218	0.98
Transmembrane Helix	219	241	0.88
Cytoplasmic	242	270	0.93
Transmembrane Helix	271	292	0.92
Non-Cytoplasmic	293	307	0.92
Transmembrane Helix	308	329	0.92
Cytoplasmic	330	391	0.84