YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-105
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFQVKAYRF IAYSAISFSF VAILSVCLSL PMIYYYINNA KTSLQGEIEF CRNSARDIYG  60
   61 EVQQFKQIPR NRTTRQAYGS LLDTDECDGC CIQGAPGPTG EPGRPGRPGK PGVPGMPGNP 120
  121 GKPPQQPCEL VTPPPCSPCP AGPPGKPGPQ GAPGDIGQPG NPGERGMDGE PGPPGPTGPP 180
  181 GEPGLPGAQG ITGQPGVNAE PVAYRAGAPG PPGEPGPPGA HGDPGDLGEE GPPGLPGPKG 240
  241 PPGASGIPGN DGPPGARGQP GLSGDSGEKG ICPKYCAIDG GVFFEDGSRR

Type	Start	End	Confidence
Cytoplasmic	1	10	0.79
Transmembrane Helix	11	35	0.81
Non-Cytoplasmic	36	290	0.92