YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-104
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSARVAGYAA IAFSLSSLFL VSTFVPALWN KINDITGELH YDMNEFRDLH NEVWANMRGE  60
   61 TFGESVVPFA RKKRQTTRPG ECVCNSNSAC PPGEAGPQGI PGHDGTPGLA GDAGAPGLPG 120
  121 NYPSINMDAH QQCRMCPPGA PGFPGPAGPP GAPGDKGNDG APGLRGPDGH PGHPGNPGYG 180
  181 GEPGAPGNNG EPGDKGRDGS HGTKGAPGPQ GPSGPVGQPG FPGQPGNDGN SGVPGIQGSS 240
  241 GGPGEDGAPG APGFDGQQGP SGTPGEDANY CKCPPRSKLS R

Type	Start	End	Confidence
Signal Peptide	1	27	0.92
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	281	0.99