YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE17120
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTLYEDRKV IFGILGTSFF SWTAFLALKG LVKKYSKPKA EWVPVGRIKS LHLYPIKSCK  60
   61 GKEVFQYRCT PFGPRLGEYL DRHFLVINSD GKFYTARTKP QMVLIETLIK DGIVRVSYPG 120
  121 REDAQFKIED VKANKDLRSG FLHVDLRTDG YDCGDAVAEF FSNVLEEPGT RVIMYDTGLF 180
  181 TERTCKTEEG WWNNEVPKRI DDTAYADLAP YMITSQASLD DLNSKLDQNV SSINFRPCIV 240
  241 VDDCAAWDED KWLDLRIGDV EMQCFKPCTR CILTTVNPET GTKDKDMQPL KKLREFRLGP 300
  301 GKLRQEFGES PIFGVNAGLV KTGYIHVGQT VWAKYKPSAF

Type	Start	End	Confidence
Cytoplasmic	1	9	0.45
Transmembrane Helix	10	28	0.68
Non-Cytoplasmic	29	340	0.75