YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE17034
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQAPAKEED FSWAYTEEPH ASRRKEILAK YPQIKELFGQ DKAFRPVVVC MVIAQIVFAY  60
   61 LLRDSDWLLI LFQAYFVSGT INHSLTLAVH EISHNQAFGT NRPLANRIFG FIANLPMCIP 120
  121 MSISFKKYHL EHHRNLGEDV IDTDVPTEFE AKVFRTWLGK MIWMSLQPLF YGIRPFMLYP 180
  181 KSMTDLELIN VAIQLLFSTF IYTQFGAKSF FFLFGGLVLG MGLHPCAGHF VSEHYVFKKD 240
  241 QETYSYYGPI NMVVFNVGYH VEHHDFPYIT GSNLPKVREI APEYYQDWQT HDSWVGMMAD 300
  301 FIFNPKMTLR KRIKRKYAKP DQFSFYGTGP YETSHVYQSI ANVVNMLTGF GGRKSVVKCD 360
  361

Type	Start	End	Confidence
Cytoplasmic	1	42	0.91
Transmembrane Helix	43	62	0.85
Non-Cytoplasmic	63	68	0.72
Transmembrane Helix	69	89	0.62
Cytoplasmic	90	103	0.51
Transmembrane Helix	104	125	0.73
Non-Cytoplasmic	126	155	0.42
Transmembrane Helix	156	178	0.51
Cytoplasmic	179	185	0.46
Transmembrane Helix	186	205	0.57
Non-Cytoplasmic	206	209	0.47
Transmembrane Helix	210	231	0.82
Cytoplasmic	232	360	0.64