YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE16937
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTCPLPPSL DEMDLRLAAD KVLNGSLINC TFQSFYDQMY QTHGVYFIFE PTPFVHPIVS  60
   61 QIFYGILFTL TIFLALMGNF TVMWIILYHR QMRSVTNYYL FNLAVADASI SVFNTGFSWS 120
  121 YNYYYVWKFG SFYCRINNLM GITPICASVF TMIVMSIERY YAIIHPLKKR PGRRSTVTII 180
  181 IMIWFMAFLF GVPAFLASKV DVYYFYDGYT LYENPLCLAD NYPGGNESLL GQVYNNGLIT 240
  241 VQYILPLCIL SAAYYRVGVE LRKDKTVGDV RHAKSVAAKK KASIMLAVVV FIFMIVWFPY 300
  301 NAYYLTLHLV EPIGNKMLSL YIYINIYWLG MSSTVFNPVI YYFMNKRFRV GFHHAFRWLP 360
  361 FVRSDKDEYQ TILSQTRPSL MPPTTMAHTD F

Type	Start	End	Confidence
Non-Cytoplasmic	1	61	0.76
Transmembrane Helix	62	87	0.88
Cytoplasmic	88	97	0.86
Transmembrane Helix	98	119	0.92
Non-Cytoplasmic	120	138	0.87
Transmembrane Helix	139	157	0.94
Cytoplasmic	158	175	0.85
Transmembrane Helix	176	197	0.94
Non-Cytoplasmic	198	237	0.95
Transmembrane Helix	238	258	0.92
Cytoplasmic	259	281	0.93
Transmembrane Helix	282	300	0.95
Non-Cytoplasmic	301	320	0.87
Transmembrane Helix	321	344	0.88
Cytoplasmic	345	391	0.99