YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE16914
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	84	0.99
Transmembrane Helix	85	106	0.95
Non-Cytoplasmic	107	120	0.92
Transmembrane Helix	121	142	0.92
Cytoplasmic	143	149	0.76
Transmembrane Helix	150	169	0.94
Non-Cytoplasmic	170	179	0.87
Transmembrane Helix	180	200	0.88
Cytoplasmic	201	215	0.83
Transmembrane Helix	216	240	0.88
Non-Cytoplasmic	241	246	0.91
Transmembrane Helix	247	271	0.91
Cytoplasmic	272	294	0.88
Transmembrane Helix	295	315	0.82
Non-Cytoplasmic	316	330	0.78
Transmembrane Helix	331	353	0.93
Cytoplasmic	354	361	0.84
Transmembrane Helix	362	381	0.95
Non-Cytoplasmic	382	388	0.81
Transmembrane Helix	389	410	0.94
Cytoplasmic	411	425	0.86
Transmembrane Helix	426	448	0.90
Non-Cytoplasmic	449	479	0.97
Transmembrane Helix	480	499	0.94
Cytoplasmic	500	544	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERSMALAER KNQNPNKSKP DPKEKKSSKK GKKSKNTEEQ EDKTKTEETQ EEIVPDPLKE  60
   61 DAKILPDLVS RSSIISAFES DGSRWFLLVS VALLNFSNTC SWIAYAPVGN YVNALYGEES 120
  121 AAWFSMIYMF VSVPFGFIGM YIGSKNTLNV PLIAACVLNA IGALIRALST QPQVDPQNRF 180
  181 PICLLGQSIA AMAYPFIMFL PSKISATCFP PSQRTIATTI GVMANPLGVM VVNLVAPLIV 240
  241 QSSDDVWILN VILFIICFVA LFFAGCSLGC LKPDETKQRK SNDYATSCGS VFGNLNYDIL 300
  301 MFALGGGIGM FNSLYTMMLQ MLCPSGYGNQ VAGICAVLMI GCGMIGATVA SIYVDKHKNY 360
  361 RTAMIVLMNF AVIFGVGFLW MSKVPNMSLI LFFISGAFGF CGLAAYPVGL ELAIECTYPA 420
  421 APEVSSGFIV LVGQLFSVLI VAIIKIGAKS LSFVDSDFGV EACRAHAEDA INVPKNYDNP 480
  481 IIIITFIAVL IAIVVWFLRE DYRRLRREMT NAPNRTRTTV STTTIVGATT QESDPLNPST 540
  541 SEQR