YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE16886
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSASLAGIS ISPIVPEELD GTIAPIGTQP MDITLAFVFS AISVIGVLGN LLVITVVLKV  60
   61 RGMKTPTNCY LVSLAASDTL FFFASMPHEM MYLLGPNDHY LFGSLGCVLL TYLPYLAMNT 120
  121 SSLSILAFTI ERYYGICNPY KARTMCTVKR ATCIICGIWI FSMLYHSYWL FLATLIKDDI 180
  181 GTSCSFRLER NSHAYKIVFL LDFVLWYVLP IMCDIIIYAK IGITLSQCGD KIKKSVKPKI 240
  241 PNEVIVEKSK TSSTSMGHYS GRDSHISGKR NSAKGRNQVV KMLAIVVAVF AVCWLPYRGM 300
  301 VVYNSFVSDP KYSWSPDWYI NLSKTLVFIN CAINPILYNL MSARFRAAFR SLLSKRKNSG 360
  361 FKSTALNQRH RLNTMDIMSS AEPKSPLITS MAGTP

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.93
Transmembrane Helix	35	58	0.91
Cytoplasmic	59	66	0.91
Transmembrane Helix	67	87	0.90
Non-Cytoplasmic	88	107	0.73
Transmembrane Helix	108	130	0.76
Cytoplasmic	131	150	0.85
Transmembrane Helix	151	169	0.91
Non-Cytoplasmic	170	202	0.89
Transmembrane Helix	203	224	0.84
Cytoplasmic	225	278	0.98
Transmembrane Helix	279	298	0.96
Non-Cytoplasmic	299	321	0.88
Transmembrane Helix	322	341	0.91
Cytoplasmic	342	395	0.96